>aligned_partner_shorter
sequence
------ELACQEITSSSSVPLCKGIGYE----YTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPIC---YKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRSSS--MRCDR---QGNPDTLCMDYER--*
>main
sequence
------ELACQEIT----VPLCKGIGYE----YTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPIC---YKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDR-----MRCDRLPEQGNPDTLCMDYER--*
>main
alternative sequence 1
GSASAKELACQEIT----VPLCKGIGYE----YTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDR-----MRCDRLPEQGNPDTLCMDYERTD*
>main
annotation_longer
XXXXXXXZZZZZZZ----ZZZZZZZZZZ----ZZZZZZZZXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBB-----BBBBBXXXXXXXXXXXXXXXXXX*
>main
annotation_shorter
------XZZZZZZZ----ZZZZZZZZZZ----ZZZZZZZZXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBB-----BBBBBXXXXXXXXXXXXXXXX--*
>aligned_partner_longer
sequence
--------ACQEIT----VPLCKGIGYEAAAAYTYMPNQFNHDTQDEAGLEVHQFWPL---------KFFLCSMYTPICLEDYKKPLPPCRSVCERA------LMRQYGFAWPDRAA---MRC--LPEQGNPDTLCMDY---D*

